PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969601.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 277aa MW: 31403.3 Da PI: 8.3794

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.1e-07	122	141	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ XP_024969601.1 122 FSCQICNKTFNRYNNLQMHM 141 89*****************9 PP
2	zf-C2H2	17.5	1.2e-05	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +CgksF k + ++H +++ XP_024969601.1 206 FSCRKCGKSFAVKGDWRTHEKNC 228 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MDLFASSSKP NNTVSEPFDF LKTKAQESAK PIPFLSFLSL EPCKLEGNSS SRCNGVEDDE 60 DSTVALRIGL PSGHNKNVIV VDDNDDDDDD RHTDNNIVGD MSANAEYWIP SRAQILAGFT 120 HFSCQICNKT FNRYNNLQMH MWGHGSEYRK GAESLRGTQP RVMIGVPCYC CEEECKNNIN 180 HPRSKPLKDF RTLQTHYKRK HGTKRFSCRK CGKSFAVKGD WRTHEKNCGK RWLCVCGSDF 240 KHKRSLKDHI TSFGSGHGPA PPLFQPVDLR FNREAIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	2e-98	C2H2 family protein