PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969664.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family AP2
Protein Properties Length: 547aa    MW: 60337.9 Da    PI: 7.047
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15251310155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_024969664.1 251 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 310
                     789******************988886678446*************************98 PP
2AP246.41e-14353404155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_024969664.1 353 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 404
                     57****************988532...5************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MKSMTDGASD DNASISNWLG VSLSPPLKME ASASSTMAPN TSSFYLSPYS CYGVAENGTT  60
FFSPLTVMPL KSDGSLCILE ALASSHPQGV MPNSSSPKLE DFLGVSHDYG SHERETMALS  120
LDSLYPESRW LYPEGIPSNI YQIHEEESTV AKHNWVVSPP PQYPSQSPYT SLGSHHNQIS  180
STTTTHMINN GGGGDVQSLS LSMSPGSQSS CVTGRTDQCL TVETKKRDSS RVTQKQPVHR  240
KSLDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDMEEKAARA  300
YDLAALKYWG SSTHINFPLE IYHQELDEMK SMSRQEFVAH LRRKSSGFSR GASIYRGVTR  360
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI KFRGVNAVTN FDVSRYDVER  420
IIASTTLLAG ELARRNKSTV VTTTTTTSLM EAGYAQLENI DHQQRTTLEE LNEKLKNPNN  480
QQQLISNELS GEKIGGQYSN PSSLITSLSC SREESPDGIS ASMAATGNVN SWVSSGHFPV  540
FAAWSDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-128AP2 family protein