PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969696.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 197aa MW: 22938.3 Da PI: 6.2968

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.8	2.1e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqv+fskRrng++KK +EL vLCd++va+ ifs +g+lye+s+ XP_024969696.1 9 KRIEDKSSRQVSFSKRRNGLMKKTHELAVLCDVDVALFIFSGRGRLYEFST 59 79***********************************************96 PP
2	K-box	24.6	1.1e-09	107	169	37	99
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 hl ++++ L+ L+qLeqqL++ l+++R +K++ ++e ++ lq+ e +l++e + + ++++ XP_024969696.1 107 HLEENNIQLLDTTGLNQLEQQLDSLLQQVRIRKTQQMMEVVKALQEEEMQLKKERNFMMEEIM 169 5666789999*********************************************99998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MGRGKVELKR IEDKSSRQVS FSKRRNGLMK KTHELAVLCD VDVALFIFSG RGRLYEFSTG 60 ESMIKLLTRY QSYKKTEELT RISVHKQKLD SENVCSADEL TQILKWHLEE NNIQLLDTTG 120 LNQLEQQLDS LLQQVRIRKT QQMMEVVKAL QEEEMQLKKE RNFMMEEIMA ARSDGIDDDS 180 GDPSQPQRPV MDAQIIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65070.1	5e-35	MIKC_MADS family protein