PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969701.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22810.2 Da    PI: 6.2968
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.1e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqv+fskRrng++KK +EL vLCd++va+ ifs +g+lye+s+
  XP_024969701.1  9 KRIEDKSSRQVSFSKRRNGLMKKTHELAVLCDVDVALFIFSGRGRLYEFST 59
                    79***********************************************96 PP
2K-box25.36.6e-101081683999
           K-box  39 lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++++ L+   L+qLeqqL++ l+++R +K++ ++e ++ lq+ e +l++e + + ++++
  XP_024969701.1 108 EENNIQLLDTTGLNQLEQQLDSLLQQVRIRKTQQMMEVVKALQEEEMQLKKERNFMMEEIM 168
                     5567899999*******************************************99998886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MGRGKVELKR IEDKSSRQVS FSKRRNGLMK KTHELAVLCD VDVALFIFSG RGRLYEFSTG  60
ESMIKLLTRY QSYKKTEELT RISVHKKLDS ENVCSADELT QILKWHLEEN NIQLLDTTGL  120
NQLEQQLDSL LQQVRIRKTQ QMMEVVKALQ EEEMQLKKER NFMMEEIMAA RSDGIDDDSG  180
DPSQPQRPVM DAQIIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.18e-35MIKC_MADS family protein