PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969764.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SRS
Protein Properties Length: 253aa    MW: 27190.3 Da    PI: 8.034
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702203.56.1e-63221864155
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.............aeaaskrkrelkskkqsa 85 
                     g ++CqdCGnqakkdC+h+RCRtCC+srg+ C+thvkstWvpaakrrerqqql  +++ ++ s+              ++++kr+r+++++ +  
  XP_024969764.1  22 GVINCQDCGNQAKKDCQHMRCRTCCRSRGLPCKTHVKSTWVPAAKRRERQQQLDLSTQPQNVSNqplslmmrsgvsgLDQNPKRPRDDHQQIAGD 116
                     6689*************************************************99988887777799*****99988778889999885554444 PP

          DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                           + ++++ + +  ++P+e++s+ vfrcvrvs+ d+ ee+laYqtavs+gGhvf+GiLyd+G++++
  XP_024969764.1 117 GGVVIPTIHHHNITPSGFHFPAELNSPVVFRCVRVSGTDETEEQLAYQTAVSVGGHVFNGILYDHGPDDQ 186
                     4443333444455666778************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MRPADYVIGG GSGSGSGGGS GGVINCQDCG NQAKKDCQHM RCRTCCRSRG LPCKTHVKST  60
WVPAAKRRER QQQLDLSTQP QNVSNQPLSL MMRSGVSGLD QNPKRPRDDH QQIAGDGGVV  120
IPTIHHHNIT PSGFHFPAEL NSPVVFRCVR VSGTDETEEQ LAYQTAVSVG GHVFNGILYD  180
HGPDDQGQYN NPIGESSSVA GAQHEHVNLV TRATTTTTRI NPAVTILDPS SMYTTPLSTY  240
LAGGTQFFPP PRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-59SRS family protein