PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969785.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 447aa MW: 49851.2 Da PI: 8.2676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	16	37	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+ksF++ +L H+r+H XP_024969785.1 16 FCKLCDKSFPSGRSLGGHMRSH 37 6********************9 PP
2	zf-C2H2	11.2	0.0011	347	369	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k Fs+ L H r+H XP_024969785.1 347 HECPICFKIFSSGQALGGHKRSH 369 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MSSLIQETEQ DWMKHFCKLC DKSFPSGRSL GGHMRSHVIN STDLHHQKQN SNCLVVLDKL 60 CKECGKGFQS WKALFGHMKC HSDKVANNHN LNQDSWTSQS DDENSGAKVK KSRSRNTRIK 120 RYITATVTTT TTVTTASSSI SMNANNQMMI SSNHASTSVV SEIEQDQESE IAMCLMMLSR 180 DDGKWDNEYE SSDYCNSSAL VRLTKVEGKK PVGNGSKIKK LAETQVGVDY LGRSEVGSAG 240 LPKIMIHNDK FIDESELGFG KTDQDSSKRK FECATCNKSF HSYQALGGHK ASHKKLKGYL 300 DPKTEPLFNH EHMINGFCAK PSDNHQSTKG FNLGAGSLKK TVVLGSHECP ICFKIFSSGQ 360 ALGGHKRSHI IAEAKLNQQT NMNLIEKVNE PIRGFLDLNM LPVPDTVEEE MMMMNNNTTR 420 YKPWYWTDSS HSTNHESTTA LLGLFSS

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MSSLIQETEQ DWMKHFCKLC DKSFPSGRSL GGHMRSHVIN STDLHHQKQN SNCLVVLDKL  60
CKECGKGFQS WKALFGHMKC HSDKVANNHN LNQDSWTSQS DDENSGAKVK KSRSRNTRIK  120
RYITATVTTT TTVTTASSSI SMNANNQMMI SSNHASTSVV SEIEQDQESE IAMCLMMLSR  180
DDGKWDNEYE SSDYCNSSAL VRLTKVEGKK PVGNGSKIKK LAETQVGVDY LGRSEVGSAG  240
LPKIMIHNDK FIDESELGFG KTDQDSSKRK FECATCNKSF HSYQALGGHK ASHKKLKGYL  300
DPKTEPLFNH EHMINGFCAK PSDNHQSTKG FNLGAGSLKK TVVLGSHECP ICFKIFSSGQ  360
ALGGHKRSHI IAEAKLNQQT NMNLIEKVNE PIRGFLDLNM LPVPDTVEEE MMMMNNNTTR  420
YKPWYWTDSS HSTNHESTTA LLGLFSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-23	C2H2 family protein