PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969818.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 293aa    MW: 32359.8 Da    PI: 6.6032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ Fs++  L  H++ H
  XP_024969818.1  84 FSCNYCKRKFSTSQALGGHQNAH 106
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MEEHKTEPCP SEASSISAEG ESLKNKTLDS KVLAEGSRAF LDVKLSNVEE DKNLELKLFN  60
PLRVAPEGES ESSKEETQEK SRVFSCNYCK RKFSTSQALG GHQNAHKQER QIAKRRQMEV  120
PPYGHLVPPP PHYGNFTYYP SFPYLTNASV STNRSSLGIN NESFIQRPSS WSTSQLNYPF  180
ATVGHHDQFT MRLPYFDRPK MLESFQRNST TSSGYYGSPL GATASSSSKL DSGTGVARDF  240
FGVSCGNGNP SATLNKGIEE EISANNLLAQ IGVVHPEHNQ DESTVGLDLN LKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-17C2H2 family protein