PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969839.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 293aa    MW: 32047.2 Da    PI: 10.05
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20166215255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  XP_024969839.1 166 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 215
                     59*******.**********32....25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGSQTQNGVS NLRSDAQLLA RHFLRLGGNG FGLSALPGIS WDDVDNLSLE CSGLNTIPMI  60
SLFKTMNTLF QSLPFFPANQ DSLDQLLKPF SLLDQIYCIH TPSTRLQYPS PETDISSECD  120
DQPAALEGIA AVVGECILFG KSPSTAGKKT GSAVPQEVVE KEVKKNYRGV RKRPWGRWSA  180
EIRDRIGRCR HWLGTFDTAE EAARAYDAAA RRLRGSKART NFEIPSVFPL SGSTSTTSPT  240
TSTSSSWAGA KKRKARSCSG KNNKCHVVTS VGQLFSNSGP MMRRRNVNNN NIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-28ERF family protein