PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969930.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 333aa MW: 36757.8 Da PI: 8.3587

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	167	226	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ XP_024969930.1 167 VKDGYQWRKYGQKVTRDNPSPRAYFKCSHApSCPVKKKVQRSVEDQSILVATYEGEHNHP 226 58*************************99**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MEYTSLVDTS LDLNSNPSHF LSLVPKQEVQ SNFIELGLKM PTHVNDKAAD GLVEELNRVS 60 AENKKLTEML TVMCENYNAL QNHLADYMSK NPAPSDSNNN NNNNNSRKRK PETLTNNNNI 120 IERGNSESSS SDEDSCKKPR QQDQQHIKAK ISRVCVRTEA SDTGLLVKDG YQWRKYGQKV 180 TRDNPSPRAY FKCSHAPSCP VKKKVQRSVE DQSILVATYE GEHNHPNQSK QEQANSGLSR 240 TVATATLGSV PCSASLGSSG PTITLDLTNP PKPPTNPSEE AKVGGNRRVD TPEFQQFLVD 300 QMASSLTKDP SFKAALAAAI SGRIVQQNQS QKW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	1e-91	WRKY family protein