PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970051.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11759.6 Da    PI: 10.9081
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCda+v v+ifsstgkl+e+ss
  XP_024970051.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVVIFSSTGKLHEFSS 59
                    8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADVGVVIFSS TGKLHEFSST  60
SSMKSVIARY RRSKDEQQLT NPTSDIKLYQ PINLSFACHL IHHI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.15e-45MIKC_MADS family protein