PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970095.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 353aa    MW: 40162.4 Da    PI: 6.5504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0689112226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_024970095.1  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                     6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MPPKQSKADL AKKQKIVEDK TFGLKNKNKS KNVQKYVQSL QQNVQPKPDA SKLAAKKKKE  60
EEKAREKELN DLFKIAVVQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE  120
KIDIFSDKRD EGTMEDWDQE TLEKVVASKG KEYNQNKPTD IVCKHFLEAV EKKQYGWFWV  180
CPNGNKECHY RHALPPGYIL KSQMKALLEE EANKLAIEDE IEDQRAKVKT TTPMTTDLFM  240
KWKRKKLEER DAGLAAQRAE RAKNDRMSGR ELFLSDASVF VDDAEAYEKY NREEKAQDGS  300
STGGPSTSTS IAAVSEDGNS EIDEDDDDLD MDELNELEAS LSKTSIQIQE PRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-165C3H family protein