PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970229.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 318aa    MW: 35098 Da    PI: 6.4063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20143192255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  XP_024970229.1 143 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDIAAYKLRG 192
                     59******9.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MASATMEFWN INDFQQRASG GLFNGGELME ALEPFIKSSS DYQNTLPFSS PSTSYPYPSS  60
SFSTSSSTHQ ESGLYPDGYT HGFSTQDPFG YEQPVSSFGL NQLTPSQIHQ IQAQINLPTF  120
NNYLAPKPVP MKQVGSPPKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA  180
LAYDIAAYKL RGDYARLNFP HLRHNGSLIG GEFGDYKPLH SSVDAKLQSI CRSLAEGKSI  240
DVGKKKGSRR SSAAKARTVV EQPEVVKVEG SESDGSGGSS PLSELSFPEF TEEESALCGS  300
DNLILEKYPS YEIDWGSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-68ERF family protein