PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970303.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25794.7 Da    PI: 9.5407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.7e-261261251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ien   rqvtfskRr g++KKA+ELS+LCd+++a+i+fs tgkl+ y+s
  XP_024970303.1 12 KIENLAARQVTFSKRRRGLFKKAQELSTLCDVDIALIVFSATGKLFQYPS 61
                    69**********************************************96 PP
2K-box45.63e-1683173999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++++ ++++a L ke+ +   e+R+++GedL+ L+l+ L +Le  +e++l ++ ++K e +l++i++l+kke +l een  L+++l+
  XP_024970303.1  83 QPSREMQTESRKSAMLSKELAEKSIELRQMKGEDLQGLDLQGLDKLEAVIESGLVEVVKTKGERMLKEISTLKKKEAQLLEENAFLKRQLA 173
                     456667777777888888888888***************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MRMVRQKTQI RKIENLAARQ VTFSKRRRGL FKKAQELSTL CDVDIALIVF SATGKLFQYP  60
SSSMNQVLER HRLQSQNVGE LRQPSREMQT ESRKSAMLSK ELAEKSIELR QMKGEDLQGL  120
DLQGLDKLEA VIESGLVEVV KTKGERMLKE ISTLKKKEAQ LLEENAFLKR QLAMMDTSIG  180
QMGIHDQCCD HHSLELTISS LSSRDPPHNY NISSSDTCLK LGQPFSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-58MIKC_MADS family protein