PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970317.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Whirly
Protein Properties Length: 239aa    MW: 26275.9 Da    PI: 10.4042
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.61.5e-56642001139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s++k+kaal+  +v+ptf++ldsg +k++r+G+++l++ +a++erkyd ekkq fals+te++++++l++++sceffhdp++k+ ++G+vrk+l+
  XP_024970317.1  64 SIFKGKAALSAAPVLPTFSKLDSGYTKVERRGTIMLTFRPAIGERKYDSEKKQLFALSVTEIGSFISLGPQDSCEFFHDPSMKSRDAGQVRKSLS 158
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     ++P++dG  +f++lsvtn++++  ++f+vPv+ aefav+r +++
  XP_024970317.1 159 IKPITDG--YFISLSVTNNVLNRTDRFTVPVTTAEFAVMRAAFS 200
                     ******5..9******************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MNPRAMVKLS QLLNSRNKLS QHKLLGESIG NCFKLTSSAA GISTSRQSYG ADGKISGRIF  60
ADYSIFKGKA ALSAAPVLPT FSKLDSGYTK VERRGTIMLT FRPAIGERKY DSEKKQLFAL  120
SVTEIGSFIS LGPQDSCEFF HDPSMKSRDA GQVRKSLSIK PITDGYFISL SVTNNVLNRT  180
DRFTVPVTTA EFAVMRAAFS FALPHIMGWA HSTNQHSNNV GQDFSKVHPQ LAAASEWDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-83Whirly family protein