PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970324.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 302aa    MW: 33070.1 Da    PI: 6.6056
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-124791147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_024970324.1 47 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 91
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGMALPNIGS FSSSPTAAVA PPSTNSSSSA DDASKKIRKP YTITKSRESW TEPEHDKFLE  60
ALQLFDRDWK KIEAFIGSKT VIQIRSHAQK YFLKVQKSGT NEHLPPPRPK RKAAHPYPQK  120
APKNAPVLSN VTASFQTSPA STDPEFNPSD PSAVVKNQVE TGSLSGIGID DMVSGGQPEA  180
VNCCSSNANA PKTQTSEIRE QRSHGLPSRV LPDFAQVYGF IGSVFDPNTD SHLHRLKKMD  240
PIDVETVLLL MRNLSINLTS PDFEDHRKLL STYEVVSEKE NSDVAVDALL ECQPEEVGHF  300
GT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.25e-93MYB_related family protein