PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970417.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 313aa    MW: 35487.6 Da    PI: 6.1789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-18350148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++++G g+W++ ++  g++R++k+c++rw +yl
   XP_024970417.1  3 KGAWTSEEDQQLINYIQKHGHGSWRSLPKLAGLKRCGKSCRLRWTNYL 50
                     79********************************************97 PP
2Myb_DNA-binding51.91.7e-1656101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+  +++++  lG++ W+tIa +++ gRt++++k++w++++
   XP_024970417.1  56 RGEFSQEEENVILHLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNTHM 101
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MKKGAWTSEE DQQLINYIQK HGHGSWRSLP KLAGLKRCGK SCRLRWTNYL RPDIKRGEFS  60
QEEENVILHL HSVLGNKWST IATRLPGRTD NEIKNYWNTH MKKKLLERGI DPMTHRPRTD  120
LFSCLPQLVA LANIKEILEH NQLAQNLQYF NLLLQSNTGL STLLNRTNSI PQIQEENPNL  180
MNGFPLEVGQ ESEEIAQLFV ENSSHVTQPL HDQEVSIMNL QTSNYDHEIV GNDYGQSRFA  240
SVNSSSSSSS VTWTPIPPLM DTITTNNSTG SLERSTTVSY GGSTGGDGVG SSYNWPEYLF  300
EDSFLDQNLR EMC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-82MYB family protein