PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970440.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 312aa    MW: 33938.8 Da    PI: 7.8037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_024970440.1 101 PWTKEEHKLFLLGLQKVGKGDWRGISRNFVTTRTPTQVASHAQKY 145
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MMSESQSGCW TNGQNSGMSA ADHGSGEIML FGVRVKVDPM RKSVSMNDLS QYVQPATHDS  60
SSNSNNLDGS AAVAADIGYA SADDAVRNHS NGGRERKRGV PWTKEEHKLF LLGLQKVGKG  120
DWRGISRNFV TTRTPTQVAS HAQKYFLRRS NLNRRRRRSS LFDITTDSVA GILVEEEQVQ  180
EDNNSTQPAQ SPMMSSQHMS PLSGFPMAAF PATVGPIPIP SPVRMENQME TATFSNGNQL  240
NSGSTQLVSP IPLLPTPDPS ITADLKLNQK HERDPLSLSL SLSLSYNNNR WESSAFQVIS  300
GFNNGDGLIS VG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.28e-51MYB_related family protein