PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970525.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 291aa MW: 32666.2 Da PI: 6.5994

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.8	1.3e-24	125	184	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ +++ pr Y+rCt++ gC++ k+v++ ++ ++++itY g H+++ XP_024970525.1 125 EDGFAWRKYGQKEILNAKAPRCYFRCTHKneGCKALKQVQKLEDGSQMFHITYFGYHTCQ 184 8*************************9999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MMETSSPNNK RLIGELIRGR DSTKELQNLL RRKTKDDGSV SAEDLVMKIL GSFSDSLSVL 60 ASCSSGDSYP VSATTTYVGS ASSGDRTLDS GESEKKPAPV VKDRRGCYKR RKTENSRVKV 120 VDTIEDGFAW RKYGQKEILN AKAPRCYFRC THKNEGCKAL KQVQKLEDGS QMFHITYFGY 180 HTCQNVHKNT HMFSDSGALS FFLHNFEDTK LNNSPSSPST ITNVQNTPLM EQEDDSNAQS 240 DDHITFNTNH DQSSIPMWKD MIGDLESSHD EFFNNGGYLS GGFKFEENVF L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	136	KRRKTENSRVKVVDTIEDGFAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-39	WRKY family protein