PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970536.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 267aa    MW: 30051.4 Da    PI: 7.0999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970536.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l d+v  +G g+W++++   g+ R +k+c++rw +yl
   XP_024970536.1 15 KGLWSPDEDQKLRDYVVNYGHGCWSAVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding51.62.2e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+e  + ++  lG++ W++I+++++ gRt++++k++w++yl
   XP_024970536.1  68 RGAFSSQEEETVLALHGILGNK-WSLISQHLP-GRTDNEIKNHWHSYL 113
                      89********************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MRCKPSEKPK LKHRKGLWSP DEDQKLRDYV VNYGHGCWSA VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSSQEEETVL ALHGILGNKW SLISQHLPGR TDNEIKNHWH SYLKKQVAKS  120
ENLEAQPKPE YTNGHTESSS SYMNSITRNT SFDSSDLANR SSADAGQPAP PAQINKLPKI  180
LFADWLSLEE FHGHQSSACK DSISNGTSNY QETPVHGLLS NEGSTDSSEA VNCLSDYSNE  240
DMFHTQMKID QIFNFTSGAF NLEDLYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-64MYB family protein