PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970572.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 253aa MW: 29023.9 Da PI: 10.2637

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.4e-14	20	103	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Lie ++ +l+rg+l++++W++v+ ++ e + r+ +qCk++++ l+k+yk +k s++p+f++l+ XP_024970572.1 20 CWSEAGTETLIESWGDRYLQLNRGNLRQKDWKDVAHAVnanrDELKPPRTDVQCKNRIDTLKKKYKLEKSKPTP------SKWPFFHRLD 103 7***********************************999889999***************99987775......68****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MDTNNQTTRH HGGGGGREDC WSEAGTETLI ESWGDRYLQL NRGNLRQKDW KDVAHAVNAN 60 RDELKPPRTD VQCKNRIDTL KKKYKLEKSK PTPSKWPFFH RLDDLIGAAN SVTRKKVSTP 120 KSASVTLTAK SNPKPNLNPN PNFKAIAYSG GSSSHDESLS RMESLDFAEE TTGYKELARA 180 ILRFGEVYKR IEDSKQEEMM KLEKQRMEFT RELEFQRLNM FMETQLELEK MKKKKKKRPS 240 AKASLSPGKN SEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	238	KKKKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	4e-55	Trihelix family protein