PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970594.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 440aa MW: 48400.3 Da PI: 8.1276

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	47	72	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_024970594.1 47 GEPDCSYYIRTGLCRFGATCRFNHPP 72 6899********************97 PP
2	zf-CCCH	38.8	1.5e-12	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_024970594.1 93 QPECQYYLKTGTCKFGATCKFHHPR 117 799********************96 PP
3	zf-CCCH	35.3	1.9e-11	139	162	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C +++rtG+Ck+G++CkF+H+ XP_024970594.1 139 EAECAYYQRTGECKFGNTCKFHHP 162 689********************8 PP
4	zf-CCCH	37.7	3.3e-12	301	327	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_024970594.1 301 PGQPDCQFYMKTGDCKFGAVCRFHHPR 327 5789*********************96 PP
5	zf-CCCH	40.1	5.9e-13	347	373	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_024970594.1 347 PGEPLCIFYSRYGICKFGPSCKFDHPM 373 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MDFDSGIPMT AELSSSLSPP SDEDALWQLN LRSREAMESG PYPVREGEPD CSYYIRTGLC 60 RFGATCRFNH PPNRKLAIAT AKMRGEYPER AGQPECQYYL KTGTCKFGAT CKFHHPREKA 120 GMAGRVSLNV LGYPLRPNEA ECAYYQRTGE CKFGNTCKFH HPHPSNMMFT FGGSPVYPTV 180 QSPTSPGQQS YPGGITNWSL SRPSFVPSPR WQGPSNYAQM ILPQGVVSVP GWNAYRGSLG 240 SLSSSESQQQ QAAGNNQIYG TSRQSETANE PLQGTYSSYH TGSVHTGYYA LPRENVFPER 300 PGQPDCQFYM KTGDCKFGAV CRFHHPRERV IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI 360 CKFGPSCKFD HPMGVLTYNF SPTSADTPTD RHLLASSSGT GPLNVTAKGP IDGVLVNSRP 420 ITLSERRQMP SNDNITDPDG

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MDFDSGIPMT AELSSSLSPP SDEDALWQLN LRSREAMESG PYPVREGEPD CSYYIRTGLC  60
RFGATCRFNH PPNRKLAIAT AKMRGEYPER AGQPECQYYL KTGTCKFGAT CKFHHPREKA  120
GMAGRVSLNV LGYPLRPNEA ECAYYQRTGE CKFGNTCKFH HPHPSNMMFT FGGSPVYPTV  180
QSPTSPGQQS YPGGITNWSL SRPSFVPSPR WQGPSNYAQM ILPQGVVSVP GWNAYRGSLG  240
SLSSSESQQQ QAAGNNQIYG TSRQSETANE PLQGTYSSYH TGSVHTGYYA LPRENVFPER  300
PGQPDCQFYM KTGDCKFGAV CRFHHPRERV IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI  360
CKFGPSCKFD HPMGVLTYNF SPTSADTPTD RHLLASSSGT GPLNVTAKGP IDGVLVNSRP  420
ITLSERRQMP SNDNITDPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-165	C3H family protein