PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970615.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 225aa    MW: 25397.3 Da    PI: 5.8504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-102166346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+  Ed+l+ da  +++ +   +W +Ia  ++ g+t++q++ ++  
   XP_024970615.1 21 TWSRYEDKLFEDALVMYPDDvvgRWQKIADAVP-GKTAEQVRAHYEV 66
                     7*****************99*************.**********965 PP
2Myb_DNA-binding44.14.7e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_024970615.1 125 PWTEEEHRLFLIGLQRYGKGDWRSISRNVVVSRTPTQVASHAQKY 169
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MYHQDTDWAI DAAAAVAAES TWSRYEDKLF EDALVMYPDD VVGRWQKIAD AVPGKTAEQV  60
RAHYEVLVHD LLQIDSGQVE LPSYADDDGD ESFLSWDPEL RASQISFGMG KGSKHGDGER  120
KKGTPWTEEE HRLFLIGLQR YGKGDWRSIS RNVVVSRTPT QVASHAQKYF LRQNSMKKER  180
KRSSIHDITT TAETMAVPPP PPTNFHGGAT PPLGYERQQN FGYPM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-76MYB family protein