PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970655.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YB
Protein Properties Length: 165aa    MW: 18018 Da    PI: 5.3197
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.67.4e-5827123298
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPian+srimkk+lP+n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yreleg+
  XP_024970655.1  27 REQDRFLPIANISRIMKKALPTNGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLSRYRELEGD 121
                     89********************************************************************************************9 PP

           NF-YB  97 kk 98 
                     +k
  XP_024970655.1 122 TK 123
                     75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MADGPGSPAG GSQSGGERSP QSNYNIREQD RFLPIANISR IMKKALPTNG KIAKDAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLWAMATLG FEDYIDPLKA YLSRYRELEG  120
DTKGSARGGD GSGKKDTIES QLPPNAQYTH QGSFTQGMNF LDSQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.16e-78NF-YB family protein