PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970708.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 352aa MW: 38680.1 Da PI: 4.2631

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.3e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WTteE+ l +v+++G g Wk I + +R+ ++k++w+++ XP_024970708.1 5 KQKWTTEEEYALCAGVEKHGHGKWKVILSDPEfasslANRSNIDLKDKWRNL 56 79************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MAKQKQKWTT EEEYALCAGV EKHGHGKWKV ILSDPEFASS LANRSNIDLK DKWRNLGSSG 60 GMPSSREKVR PPRLEGVGIN SLLSSPEPLS AVPLLEYGDM AEPSRSSVDR RTVPEYEAMI 120 FEALFNIDDP NGPDANKIMD FIELRYEVPQ NFRRSVTSKL RRLVLTGELE KVDNCYKFKN 180 AFCGAEPSQL EDVRMNNPDN RNGEQQAPEG SLTPLATDNT PEDSLTPLAT EKAPEDSPTP 240 LATENTPEDS PTPLATENAP EDSPTPLAIE NAPMNSPTPV ATAQERAPPP IPTETLEDAA 300 LYAVYAVAVA ENVEQEAADA CKKAELLAEA LEESTATLML IEELHKQWSE LH

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MAKQKQKWTT EEEYALCAGV EKHGHGKWKV ILSDPEFASS LANRSNIDLK DKWRNLGSSG  60
GMPSSREKVR PPRLEGVGIN SLLSSPEPLS AVPLLEYGDM AEPSRSSVDR RTVPEYEAMI  120
FEALFNIDDP NGPDANKIMD FIELRYEVPQ NFRRSVTSKL RRLVLTGELE KVDNCYKFKN  180
AFCGAEPSQL EDVRMNNPDN RNGEQQAPEG SLTPLATDNT PEDSLTPLAT EKAPEDSPTP  240
LATENTPEDS PTPLATENAP EDSPTPLAIE NAPMNSPTPV ATAQERAPPP IPTETLEDAA  300
LYAVYAVAVA ENVEQEAADA CKKAELLAEA LEESTATLML IEELHKQWSE LH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	3e-43	MYB_related family protein