PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970781.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 669aa MW: 73054.9 Da PI: 6.5779

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.7	3.4e-14	267	326	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_024970781.1 267 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqvRKgRQVYLGGYDKEDKAARAYDLAALKYWG 326 57*****************666665587447******99***********98 PP
2	AP2	50.1	7e-16	371	420	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_024970781.1 371 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 420 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MAASMNNWLG FSLSPQDQQQ IVDNFNSDDI SATAECFDLP SNAAVHSNIP SLNLPPPFGF 60 LEPYHHHHHD WNMKSSSELS MLMGGGGGGG SNGGGGGSCN GENPEIQAPK FENFLSVGNG 120 GDYMYSTTNC SMQLPPQAAV TDVTTTTRGS NATATTTGTG SSIGLSMIKN WLRNNPAPSH 180 QQNNTTATTR PTESHDNNDG GAAAMGGFCG GRSNELSLSM NSSSSDNKRQ QMEVATTVDS 240 ENGGGGGGGA IEAVPRKSID TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQVRKGR 300 QVYLGGYDKE DKAARAYDLA ALKYWGTTTT TNFPISNYEK EVEEMKHMTR QEYVASLRRK 360 SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FGTQEEAAEA YDIAAIKFRG 420 LNAVTNFEIN RYDVKCILES TTLPIGGAAK RLKDAEQAAA TELLRVAKED HLTSQMTTHE 480 GIHGYAAMNW PSSIDYHHQT LSQPHAQPFS MHYPQNYTNG SSQQRLWCKQ EQHDPDHGQG 540 FQDLQHIHQF FQPSPPSSVL HNLMNLDSSS MEHSYDGGGE HHHAVVGYDG DSGNNGYINH 600 MMATTTNGSS QDGLCDQNHG VSNGNLYYHH EGSTYSNWVP TAIPTLAART ANLVVAHGDA 660 PTFTMWNDT

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MAASMNNWLG FSLSPQDQQQ IVDNFNSDDI SATAECFDLP SNAAVHSNIP SLNLPPPFGF  60
LEPYHHHHHD WNMKSSSELS MLMGGGGGGG SNGGGGGSCN GENPEIQAPK FENFLSVGNG  120
GDYMYSTTNC SMQLPPQAAV TDVTTTTRGS NATATTTGTG SSIGLSMIKN WLRNNPAPSH  180
QQNNTTATTR PTESHDNNDG GAAAMGGFCG GRSNELSLSM NSSSSDNKRQ QMEVATTVDS  240
ENGGGGGGGA IEAVPRKSID TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQVRKGR  300
QVYLGGYDKE DKAARAYDLA ALKYWGTTTT TNFPISNYEK EVEEMKHMTR QEYVASLRRK  360
SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FGTQEEAAEA YDIAAIKFRG  420
LNAVTNFEIN RYDVKCILES TTLPIGGAAK RLKDAEQAAA TELLRVAKED HLTSQMTTHE  480
GIHGYAAMNW PSSIDYHHQT LSQPHAQPFS MHYPQNYTNG SSQQRLWCKQ EQHDPDHGQG  540
FQDLQHIHQF FQPSPPSSVL HNLMNLDSSS MEHSYDGGGE HHHAVVGYDG DSGNNGYINH  600
MMATTTNGSS QDGLCDQNHG VSNGNLYYHH EGSTYSNWVP TAIPTLAART ANLVVAHGDA  660
PTFTMWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-132	AP2 family protein