PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970785.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 534aa MW: 57071.6 Da PI: 5.7918

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	215	260	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W++ Ed l av++ G g+W+ I + Rt+ q+ rw+ XP_024970785.1 215 RKPWSAAEDMELFSAVQKCGEGNWANILKGDFkGDRTASQLSQRWN 260 789************************9842235999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MQFHSINQES EMDEKTKKQK KGAISEEDVS TILQRHTATT VLALLQEVAQ VQDAKIDWNA 60 LVKRTTTGIT NPREYQMLWR HLAYRDPLVE NLEEEAKPLD DDSDLEYELE AFPPVNNEAL 120 MEAAACVKVL IASGSACGSG LEKGLTIEAP LTINIPDGKS AGNPSENPQV ASNVRGTNIT 180 VPVSVQKQPL PTVASTEGLD TNGCASSSLP PRRKRKPWSA AEDMELFSAV QKCGEGNWAN 240 ILKGDFKGDR TASQLSQRWN IIKKRNGNSN IRTGSQLSEV HLAARRALNM ALDQPGLDNL 300 KSSSSLGRTK SSITSNASAR PIVADTPSTS TLPQDLACED STPIKTFSKT RPKTSPKPLA 360 NGPDAVKAAA VAAGARIATQ SAAAAILKQQ LKSAIHIKTS VTGNTRTSPG ANFRDLHSPN 420 ANVGPILNPS STGPEMNGIA ISTSPKRIQE DETAISGNAQ DESSSRADAE NGNLGRLEAS 480 ASNTNIQDTS EKEGKPFAAI ERRISGDGEV VMVESGENES VKQDHREVES KDGV

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MQFHSINQES EMDEKTKKQK KGAISEEDVS TILQRHTATT VLALLQEVAQ VQDAKIDWNA  60
LVKRTTTGIT NPREYQMLWR HLAYRDPLVE NLEEEAKPLD DDSDLEYELE AFPPVNNEAL  120
MEAAACVKVL IASGSACGSG LEKGLTIEAP LTINIPDGKS AGNPSENPQV ASNVRGTNIT  180
VPVSVQKQPL PTVASTEGLD TNGCASSSLP PRRKRKPWSA AEDMELFSAV QKCGEGNWAN  240
ILKGDFKGDR TASQLSQRWN IIKKRNGNSN IRTGSQLSEV HLAARRALNM ALDQPGLDNL  300
KSSSSLGRTK SSITSNASAR PIVADTPSTS TLPQDLACED STPIKTFSKT RPKTSPKPLA  360
NGPDAVKAAA VAAGARIATQ SAAAAILKQQ LKSAIHIKTS VTGNTRTSPG ANFRDLHSPN  420
ANVGPILNPS STGPEMNGIA ISTSPKRIQE DETAISGNAQ DESSSRADAE NGNLGRLEAS  480
ASNTNIQDTS EKEGKPFAAI ERRISGDGEV VMVESGENES VKQDHREVES KDGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	217	PRRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	4e-79	MYB_related family protein