PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970892.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 338aa    MW: 38101.9 Da    PI: 7.4719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_024970892.1 17 RGLWSPEEDEKLINYITSHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding491.4e-1570112145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ +E  l+vd+++ lG++ W+ Ia++++ gRt++++k++w+
   XP_024970892.1  70 RGSFSSQEASLIVDLHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 112
                      899*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGHGGGHTCC NKQKVKRGLW SPEEDEKLIN YITSHGHGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSSQEASL IVDLHRILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKLL  120
AHTHHHHLSN HALATATTTT TTFPNPKATN IHVSLSGDHQ YYEGLFDANP NVINPYQPHM  180
IHDDQDHRHV HTPPPPAATQ PPLINLDKCF VGIDPSPILP PLPPSFTVNP SPEFDHQFPT  240
MEFLNSYDHN ILKPENYDLI LGQNSDHHHN HHPEIPFKLG DVELSQPIAN SNELHTPTSS  300
QTEYLETFVP NFLSSSPPSL VLPQFVVSKV RSIYNVTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-73MYB family protein