PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970908.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WOX
Protein Properties Length: 241aa    MW: 27121.4 Da    PI: 9.289
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.31.9e-21108167357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  XP_024970908.1 108 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLskygKIEGKNVFYWFQNHKARERQ 167
                     7*****************99**************************************97 PP
2Wus_type_Homeobox119.51.4e-38108169465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
     XP_024970908.1 108 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQ 169
                        8***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGLSSMKVHQ FARGAGGFWG DDESSSSALT LDVCKRLHPR PLTPKLTTSG SSETCFTMNN  60
ISVSNSSSSN NHAFDLKSFI RPESCPIQLV SPNHKKDSPQ VETHPGGTRW NPTQEQIGIL  120
EMLYRGGMRT PNAQQIEQIT AQLSKYGKIE GKNVFYWFQN HKARERQKQK RNNLGLSHSP  180
RSTPASTMIN SISLNPRGEV VESPYKKCRS WSFECLDKDH EEDNKTLELF PLHPEGRSRC  240
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.14e-72WOX family protein