PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970912.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 213aa    MW: 24501.3 Da    PI: 8.7924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+++G  +W+  +++ g+ R++k+c++rw +yl
   XP_024970912.1 14 KGAWSEEEDDQLRAYVHRYGHWNWRELPKYAGLARCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding55.51.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l+ +++k +G++ W++Ia++++ gR+++++k++w+++l
   XP_024970912.1  67 RGNFSKEEEDLIEKYHKDMGNK-WSAIAAKLP-GRSDNEIKNHWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVRAPCVDKN GIKKGAWSEE EDDQLRAYVH RYGHWNWREL PKYAGLARCG KSCRLRWMNY  60
LRPTVKRGNF SKEEEDLIEK YHKDMGNKWS AIAAKLPGRS DNEIKNHWHT HLKKRTPKPV  120
QDISKKEEQS SSVEQIMLFT GQPPSVVSTS NTNVISNESS ASHRISDESS AFHRPTIESL  180
ASQRTSDDSS SHSSGVERRL FIDLNQEYVE TLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-57MYB family protein