PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970963.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 577aa MW: 64241.3 Da PI: 4.6508

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.1	3e-13	247	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C++++rtG Ck+G++CkF+H+ XP_024970963.1 247 EDCSYYMRTGMCKFGSNCKFNHP 269 89********************9 PP
2	zf-CCCH	28.2	3.3e-09	294	318	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+f++ +G CkyG +CkF+H++ XP_024970963.1 294 QIECKFYLSSGGCKYGKSCKFNHSR 318 568********************95 PP
3	zf-CCCH	39.3	1e-12	338	363	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G CkyG++C+F+H+ XP_024970963.1 338 PGERECPYYMRNGSCKYGPNCRFNHP 363 5789*********************9 PP
4	zf-CCCH	34.1	4.7e-11	481	507	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Cky CkF+H++ XP_024970963.1 481 PGQPECSYFMKTGDCKYRTACKFHHPK 507 5789*********************96 PP
5	zf-CCCH	32.9	1.1e-10	529	552	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+CkyG+ Ck+ H+ XP_024970963.1 529 QNICTHYSRYGICKYGPACKYDHP 552 679********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MEAFQQKSLV DDQQQHLDLG LLSDPPIDND KIVDILALEL ENLVIACKDE VIDRDLSGSS 60 VVMDDDDEVK RAIDEELRQL VVKEAANEAF QAESLSGSGE NNCRDVKQFV DEAIERHGLI 120 KVIEEDPKEC RVLEEPEVGE GGIGCGKEEE KVVDDDEKVF KHGEDLKEKH EIEIEDGGGS 180 SEIVGYENNG EERRSEDGND REFQIIEDLE NGSENAGGES EDGGGLGMVP DDGRLKRYYY 240 PLRPDAEDCS YYMRTGMCKF GSNCKFNHPL RRRNQQPSKE TKKQMEEPLE RPGQIECKFY 300 LSSGGCKYGK SCKFNHSRGK TAVTPVAEYN FLGLPIRPGE RECPYYMRNG SCKYGPNCRF 360 NHPDPTAVGG GDAPPTYGND GPVPLQNASQ ANIPSWSVPR TPDGSAAFLP VIYSPTQSMP 420 PPNPDWNGYQ TPAPPPAHVY PNSERGLPIP PAFFLNNPPS DTSLYTHHQQ QMLVSDYPER 480 PGQPECSYFM KTGDCKYRTA CKFHHPKSRI TKTPPSVLSD KGLPLRPDQN ICTHYSRYGI 540 CKYGPACKYD HPANYSNSIP PAGERYGSDG PLMQQSV

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MEAFQQKSLV DDQQQHLDLG LLSDPPIDND KIVDILALEL ENLVIACKDE VIDRDLSGSS  60
VVMDDDDEVK RAIDEELRQL VVKEAANEAF QAESLSGSGE NNCRDVKQFV DEAIERHGLI  120
KVIEEDPKEC RVLEEPEVGE GGIGCGKEEE KVVDDDEKVF KHGEDLKEKH EIEIEDGGGS  180
SEIVGYENNG EERRSEDGND REFQIIEDLE NGSENAGGES EDGGGLGMVP DDGRLKRYYY  240
PLRPDAEDCS YYMRTGMCKF GSNCKFNHPL RRRNQQPSKE TKKQMEEPLE RPGQIECKFY  300
LSSGGCKYGK SCKFNHSRGK TAVTPVAEYN FLGLPIRPGE RECPYYMRNG SCKYGPNCRF  360
NHPDPTAVGG GDAPPTYGND GPVPLQNASQ ANIPSWSVPR TPDGSAAFLP VIYSPTQSMP  420
PPNPDWNGYQ TPAPPPAHVY PNSERGLPIP PAFFLNNPPS DTSLYTHHQQ QMLVSDYPER  480
PGQPECSYFM KTGDCKYRTA CKFHHPKSRI TKTPPSVLSD KGLPLRPDQN ICTHYSRYGI  540
CKYGPACKYD HPANYSNSIP PAGERYGSDG PLMQQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-125	C3H family protein