PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970973.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 255aa    MW: 28401.1 Da    PI: 7.0768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970973.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08160200954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_024970973.1 160 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 200
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MDIEFLKSIS EDQTEMMMMM QLEKLPDFCG IYADDQTPST EFTDQGSSSS TNLNANMSHL  60
MEDSHFGSPT FMNPSTTISF TSPTQPPGGE MQFLSSSRWR SGVDGESQST VEQKRNSMAA  120
MREMIFRIAA MQPIHIDPES VKPPKRRNVK ISKDPQSVAA RHRRERISER IRILQRLVPG  180
GTKMDTASML DEAIHYVKFL KNQVQSLEKA SENRPATTAG IGFPVPMSSG NYISMGTSAK  240
GYQQSAQNVQ NYLGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-48bHLH family protein