PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971040.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 221aa MW: 24681.1 Da PI: 8.0695

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.4e-40	47	147	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r +a++slvyeA +r+rdPvyG++g i++lqqq++ l+ael+ XP_024971040.1 47 PCAACKLLRRRCAQECPFSPYFSPHEPHKFACVHKVFGASNVSKLLMEVPECQRAEAANSLVYEASIRLRDPVYGCMGAISALQQQVQFLEAELN 141 7********************************************************************************************** PP DUF260 96 llkeel 101 l+++++ XP_024971040.1 142 LVRSQI 147 *99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MFDELVLMYR ERVDETGKKF KRDINASAQL GRRHVFGSLG TLNTISPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPHKFACVH KVFGASNVSK LLMEVPECQR AEAANSLVYE ASIRLRDPVY 120 GCMGAISALQ QQVQFLEAEL NLVRSQILRY KFRDNNQQDD HHILPSSHDH LAVLSTGAVS 180 IAAPPPPLPL PRSSSSSTYT LQTTTTTDYS TITSDNISYF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-72	LBD family protein