PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971041.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 216aa MW: 24042.2 Da PI: 8.4855

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.9	2.3e-40	42	142	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r +a++slvyeA +r+rdPvyG++g i++lqqq++ l+ael+ XP_024971041.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPHKFACVHKVFGASNVSKLLMEVPECQRAEAANSLVYEASIRLRDPVYGCMGAISALQQQVQFLEAELN 136 7********************************************************************************************** PP DUF260 96 llkeel 101 l+++++ XP_024971041.1 137 LVRSQI 142 *99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MSRERERVDE TGKKFKRDIN ASAQLGRRHV FGSLGTLNTI SPCAACKLLR RRCAQECPFS 60 PYFSPHEPHK FACVHKVFGA SNVSKLLMEV PECQRAEAAN SLVYEASIRL RDPVYGCMGA 120 ISALQQQVQF LEAELNLVRS QILRYKFRDN NQQDDHHILP SSHDHLAVLS TGAVSIAAPP 180 PPLPLPRSSS SSTYTLQTTT TTDYSTITSD NISYFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-75	LBD family protein