PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971312.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 247aa MW: 27646.2 Da PI: 7.7825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	57	103	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRRdriN + +Lr+l+ ++ K++Ka+ L k+ve++k+L XP_024971312.1 57 KNHSEAEKRRRDRINAHLTTLRRLVSNS-----DKMDKASLLGKVVEHVKEL 103 78*********************997.....7**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MDNLYSSWIQ DADPFSTWDH HSLLPPTLHQ LTASDDHGGC SNGGGQSEDG KATAASKNHS 60 EAEKRRRDRI NAHLTTLRRL VSNSDKMDKA SLLGKVVEHV KELKSETKEL SKVSTIPTDL 120 DEVIIDLDSG TVDPNTSVFI RASLCCEDRR EVFSEIKHAL KSLRLTVVQA DMTCLGGRMK 180 CNLILCVTNN NPSKIDEKEL TMLKHSLKIL FGRIVSSSSW TTSTNYRIKS KRQRFFCSSN 240 YNANDCE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	234	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-41	bHLH family protein