PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971330.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 233aa MW: 25163.1 Da PI: 7.8553

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.4	3.8e-46	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ XP_024971330.1 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLS 102 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_024971330.1 103 YAKSE 107 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MASSSTSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHQ 60 REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQMD LSYAKSELSK YQSHNLNGSA 120 TQGLIAAAAA AAAATHHHHH HQTLGNNLIG CCGGGVVSRD HLYHHHSPFF PTRDQQTAAI 180 RAFDVNSSYD GTTGGGAGVL AMNASTGCIG QHPQFQQPRA AGNDDRPTPI DPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	3e-76	LBD family protein