PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971334.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 226aa MW: 25429.4 Da PI: 9.6689

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.5e-18	36	81	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEd++l + v+++G+++W++I++++ gR++k+c++rw + XP_024971334.1 36 KGPWSSEEDKILTRFVQRYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 81 79***************************9.*********985 PP
2	Myb_DNA-binding	52.7	9.9e-17	90	132	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++q+G++ W+tIar + gRt++ +k++w++ XP_024971334.1 90 PFSPAEDQTILAAHAQYGNR-WATIARLLV-GRTDNAVKNHWNST 132 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MEAFINRCSS SSSDHSSSSD SSHKTLKPNK LHATIKGPWS SEEDKILTRF VQRYGPRNWS 60 LISKYIKGRS GKSCRLRWCN QLSPNVEHRP FSPAEDQTIL AAHAQYGNRW ATIARLLVGR 120 TDNAVKNHWN STLKRRHQSA VSEREVLGDD GGDFKMISLS TNFPTSGSLA ADEYDPMTTL 180 SLAPPGMRES RRESFPAGFW DVMKDVIAKE VREYVTTSFP DTSGFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-58	MYB family protein