PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971430.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 329aa    MW: 36242.8 Da    PI: 7.343
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.7e-1258102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT  E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_024971430.1  58 RESWTDPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 102
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MVSLNPNPHE GFYSDSSAMV MASFSAPAVV VVPPSVNSSS ADDASKKIRK PYTITKSRES  60
WTDPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ KYFLKVQKSG INEHLPPPRP  120
KRKAAHPYPQ KAARNAPAIS QVTASFKTSP ALSEPGYVRG TNPCTLVMNP VSDAAVCSRT  180
HNSMDFGSLP RMAKDDRTPG GQPAATNCCS SNESGLKTRP TSETHEQRTH GLPLRVLPDF  240
AQVYGFIGSV FDPSTSGHLQ KLKKMDPIDV ETVLLLMRNL SINLSSPDFE DHRQLLSTYE  300
VDSEKENSDD VIDTLLDCQS GQDFSHLGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-95MYB_related family protein