PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971446.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 249aa    MW: 27888.7 Da    PI: 8.0371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-1371122255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  h+e Er+RR+++ +  + Lr+llP  +   ++K s ++   +Av+YIk++q
  XP_024971446.1  71 KLIHKELERQRRKDMAKLCSSLRSLLPLEF--IKGKRSTSDHMHQAVNYIKHMQ 122
                     567*************************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MFSFLQSDDL VFHEVGQQDL PVDLQDHVTM ERNINYPAIK TRKRPGDLST SKPNPVHADR  60
VGDGKDDAQR KLIHKELERQ RRKDMAKLCS SLRSLLPLEF IKGKRSTSDH MHQAVNYIKH  120
MQENIKVQGA QRDQLIKKFA GMSARHLGSM NTNESLTNLL PNTVSVNPCN GGIEILINSC  180
SIQDGFSLSG VLKALVEEGL NIISCTSTKV SERLFHTIQS EVNNEPAWTD PSALQQRLTA  240
IANNHLNVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.13e-39bHLH family protein