PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971479.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 217aa    MW: 26066.2 Da    PI: 9.3931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+q+G+++W++Ia++++ gR++k+c++rw++ 
   XP_024971479.1  4 RGHWRPSEDQKLRQLVQQYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding58.12.1e-185699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+eE+e+l+ +++++G++ W+ Ia+ ++ gRt++ +k++w+ 
   XP_024971479.1 56 RSPFTEEEEERLLAYHREFGNR-WANIAKLFP-GRTDNAVKNHWHV 99
                     789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MCSRGHWRPS EDQKLRQLVQ QYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPKINRSPFT  60
EEEEERLLAY HREFGNRWAN IAKLFPGRTD NAVKNHWHVI MARRHRERST RMYRRITATT  120
DTDTNHLFTE RCRYTNFPYE ISRNIASHLQ LSKNLVHQFK IHEDKKDQSV EFYNFLPVNT  180
DSNKSEVIDH AKKDEVEVEQ EATEQQRRDV VPFIDFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-82MYB family protein