PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971516.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 361aa    MW: 39255.8 Da    PI: 6.8535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1765114255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  XP_024971516.1  65 KYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFSTAEDAARAYDRAAVILYG 114
                     7*****999.**********954...5999******************977765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MDDTATGHHL PQDHHHDTSI TNNHLHSTSD SSPPTATTCS AGLETRSSPN RKGKGKGGPD  60
NSKFKYRGVR QRSWGKWVAE IREPRKRTRR WLGTFSTAED AARAYDRAAV ILYGSRAQLN  120
LQQTCTDGNT TSSTSSSHSS SSSSSRGGSG SSSSSTTQTL RPILPRPAGF NLNFSNSQAP  180
PSPLPVFGNY LPYGLIYPTV HQGTNGSDDR CTGNIVPYPL QMVQQQQEYL PYTNTNNITV  240
LTGEDPTFRG TTMLTSFDAN PNPNPNPRSN LEKLRQSPQQ YRDYQGNGYE KDDDEIKALV  300
GSVGSSLSLI SSASPPMGIG EAVSDPTVVG GPTSPSLWSY THDDEYPPPC IWDYGDPSFD  360
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.16e-31ERF family protein