PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971528.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 358aa MW: 39974.9 Da PI: 8.0746

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.1e-32	155	208	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_024971528.1 155 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 208 9****************************************************7 PP
2	Myb_DNA-binding	45.6	1.6e-14	156	207	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ +v+av++lGg+ t+k++ + m+ k +tl ++ks++q+y+ XP_024971528.1 156 RMRWTSTLHAHFVHAVQLLGGHeraTPKSVLELMNvKDLTLAHVKSHLQMYR 207 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MFLASRTTPM TSGIAATTLP DLSLQISSPA ADCIKRPTCS STTTDSNSSG SDLSHENGLN 60 VFNHQYYPPV AADMGCLVTN GLQLDQPRLS LGLEMASFNP PPLHHPTLPL QLQRNSMLLQ 120 HQYGNQHYHQ PQIYSQEFKR NSRMGSRVRR IVRAPRMRWT STLHAHFVHA VQLLGGHERA 180 TPKSVLELMN VKDLTLAHVK SHLQMYRTVK STDKGAAGLA DMGMINPRIP RTLLQMEGDI 240 SPFDDKIDDT NNSSLNQSHN SIHPSRPTTL QTSQRGLWSL SMDTYDSSFS TEEYTPNCST 300 LGAIDITVNE REASLHLSEK DRKLENNSSN KSSNSSRLLN LEFTLGRPGR QMDERILE

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MFLASRTTPM TSGIAATTLP DLSLQISSPA ADCIKRPTCS STTTDSNSSG SDLSHENGLN  60
VFNHQYYPPV AADMGCLVTN GLQLDQPRLS LGLEMASFNP PPLHHPTLPL QLQRNSMLLQ  120
HQYGNQHYHQ PQIYSQEFKR NSRMGSRVRR IVRAPRMRWT STLHAHFVHA VQLLGGHERA  180
TPKSVLELMN VKDLTLAHVK SHLQMYRTVK STDKGAAGLA DMGMINPRIP RTLLQMEGDI  240
SPFDDKIDDT NNSSLNQSHN SIHPSRPTTL QTSQRGLWSL SMDTYDSSFS TEEYTPNCST  300
LGAIDITVNE REASLHLSEK DRKLENNSSN KSSNSSRLLN LEFTLGRPGR QMDERILE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	2e-41	G2-like family protein