PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971545.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 229aa MW: 26564.8 Da PI: 8.5513

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.4	5.9e-09	82	105	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC +f+ + C++GdrC+F+H XP_024971545.1 82 KTKLCWRFMNGEKCQFGDRCHFNH 105 9*******66********** PP
2	zf-CCCH	40	6.6e-13	134	160	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++++ tG C +G +C+FaHg+ XP_024971545.1 134 WKTRLCNRWMSTGSCAFGLKCCFAHGE 160 8************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MENQFPKRPR SSEPLPNRRT QCKTEPCLRF RRGTYDHGDR CCFVHGNGDL RTVDGRNELI 60 GADESSRVKH WDENQNPRCS DKTKLCWRFM NGEKCQFGDR CHFNHIRTER KSVAISIVNV 120 AGNGQMQQHK QTPWKTRLCN RWMSTGSCAF GLKCCFAHGE SELQKRGSND AQDYADGEPC 180 KWVDMTCEKK VDGKRWEFKW KDVEKIGRIY ADWINDTSLV HVENGNVAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	8e-21	C3H family protein