PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971547.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 162aa    MW: 17889.3 Da    PI: 5.5154
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.12.5e-379106197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ pyf+ +q +++fa+vhk+FGasnv+kll +lp ++r++a+ s+ yeA ar++dP+yG+++ il+l+qq+  l++e+
  XP_024971547.1   9 SCGACKFLRRKCTNECVFTPYFCYSQgAHHFAAVHKVFGASNVSKLLMKLPLQNRSEAAISISYEALARMEDPIYGCIAQILALEQQVTILQEEI 103
                     6***********************9989******************************************************************9 PP

          DUF260  95 all 97 
                     ++l
  XP_024971547.1 104 EQL 106
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MTASGSSSSC GACKFLRRKC TNECVFTPYF CYSQGAHHFA AVHKVFGASN VSKLLMKLPL  60
QNRSEAAISI SYEALARMED PIYGCIAQIL ALEQQVTILQ EEIEQLTSYM AYDPIGLLNY  120
ESFQEIGDLN AGLPSSFQFN NTSISDHLNQ PLLFAAPHAS FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-45LBD family protein