PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971571.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 389aa    MW: 44976.1 Da    PI: 10.3963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06367389225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     ++ lCr++ + G C+yG +Ck+ H
  XP_024971571.1 367 RQQLCRYYPQ-GRCHYGTNCKYLH 389
                     5689******.************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MVEKLKVEQC KLYLRKHGLR LTGKKDILIH RIKEHISIMN GEGEHKYPAC SFVMNCKGDS  60
CTGDVVLFEQ NVYEMFSIAS RSATGPPCGT RVIAGRIVKE SYGAAKQQHT FTIEVLWSKG  120
VKPLPPLHPL LIKGRNLYRL KTMRQRWENE SERQKILSEK HFRGNTARSY RAARLQEKEI  180
KKALRERTSK GNIQNENQAK KTTASPTRPM IKAKNPTKPD FQNASIQHET RNWPPPSDTH  240
PHAGVPYTEV LRHQPLMSRI HYPHEGSYKE NINSNMLRSA VGWEPNTSSR NTFQAEQNCR  300
LYPSRPFQNL PQTHAFQQGH LPREVQNLPQ SHSSQQGYLP REVQNLPQSH TSQQGHLPRD  360
HHHQGQRQQL CRYYPQGRCH YGTNCKYLH