PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971728.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27992.8 Da    PI: 8.1153
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.4e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl ey++
  XP_024971728.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLCEYAT 59
                    79***********************************************86 PP
2K-box102.55.4e-34781762100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      + + +s++++ + s++ e+akLk++ie+Lq++qRh++Ge+L+sLs+keLq+LeqqL+ +lk+iR +Kn+++le+i++lqkk kel ++n+ L+k
  XP_024971728.1  78 TEMQLTSTHNESQGSWNLEHAKLKARIESLQKTQRHFMGEELDSLSMKELQNLEQQLDMALKHIRLRKNQVMLESISQLQKKDKELLDQNNFLSK 172
                     5678888899999********************************************************************************** PP

           K-box  97 klee 100
                     +++e
  XP_024971728.1 173 QIKE 176
                     *987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLCEYATD  60
SANRMERILE RYERYSYTEM QLTSTHNESQ GSWNLEHAKL KARIESLQKT QRHFMGEELD  120
SLSMKELQNL EQQLDMALKH IRLRKNQVML ESISQLQKKD KELLDQNNFL SKQIKEMEKE  180
VGQHDVEHQS HEMIASFQLG ICDTYNGGQA GGADGEVEEN PRQVQGQAST SGMPPWMIQH  240
MNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-90MIKC_MADS family protein