PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971777.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 518aa MW: 55084.8 Da PI: 8.3287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024971777.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.7	4.3e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_024971777.1 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MVDFESSSAM AVSATSVEGT ECSSGGNQIV AAPEIQPMKK KRNLPGMPDP DAEVIALSPT 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRD GKEIRKRVYV CPEKSCIHHD 120 PSRALGDLTG IKKHFSRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTKE YRCDCGTLFS 180 RRDSFITHRA FCDALAQESA RSQTQNVVIS NSDHHSHRQE TAKVEVTVLP PSCSPPPPPL 240 TPSTGVLSPV PSVHSSEVPE KATGVLQHQK GAVAEAEAAE KCLATATATT TTTASGGSTS 300 SGNNIVTDNT GVFASIFASP SVLPPSQSSP ASYSNLVCGV VETDRNAKVE PMSLSLSSSL 360 YRSSTAAPSL FPPPDQTLHR QYVQPALSAT ALLQKAAQMG ATSSNTSFLH ALGLAPPPPS 420 SSADQYQETS IGQWSNIQSK QERNDNSGIG RDQMLMGPPA PTTLDFLGLG MGGGTGGSSG 480 GYSAFLSSLG ASVSGGVSFG GVQNKEWDDS GDKKPALL

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MVDFESSSAM AVSATSVEGT ECSSGGNQIV AAPEIQPMKK KRNLPGMPDP DAEVIALSPT  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRD GKEIRKRVYV CPEKSCIHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTKE YRCDCGTLFS  180
RRDSFITHRA FCDALAQESA RSQTQNVVIS NSDHHSHRQE TAKVEVTVLP PSCSPPPPPL  240
TPSTGVLSPV PSVHSSEVPE KATGVLQHQK GAVAEAEAAE KCLATATATT TTTASGGSTS  300
SGNNIVTDNT GVFASIFASP SVLPPSQSSP ASYSNLVCGV VETDRNAKVE PMSLSLSSSL  360
YRSSTAAPSL FPPPDQTLHR QYVQPALSAT ALLQKAAQMG ATSSNTSFLH ALGLAPPPPS  420
SSADQYQETS IGQWSNIQSK QERNDNSGIG RDQMLMGPPA PTTLDFLGLG MGGGTGGSSG  480
GYSAFLSSLG ASVSGGVSFG GVQNKEWDDS GDKKPALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2 family protein