PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971956.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 22206.3 Da PI: 9.5341

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.3	9.9e-19	15	59	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ien++ r v++skRrn ++KKA+EL +LC++++a+++fs tgk XP_024971956.1 15 KLIENERERAVSLSKRRNDLFKKANELATLCGVKIAILLFSITGK 59 569***************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MSRLPREVNR NTELKLIENE RERAVSLSKR RNDLFKKANE LATLCGVKIA ILLFSITGKP 60 ISFGSPNIQS VVNRFLNSDQ VDQQQDDTDT RSINFYREST NPELNNELNK VIERLADVKK 120 EGQMLDEILK RPYGGKTHKE YVRSLGYDEL MQLKGKNEEL KRICVEASRL SSSNEEHDAI 180 YSKIGGPKKY LKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-23	M-type_MADS family protein