PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971980.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1370aa MW: 149991 Da PI: 4.8705

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	454	473	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+Fs++ +++ Hi XP_024971980.1 454 FECQICHKTFSDRNQYNGHI 473 89**************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1370 aa Download sequence
MATTAAADDD SDRPPLRRDS VPVVDLRLLS QSELYSLSLS SDSSFDLNRG DDVVIPKINR 60 SVFNESAGSR KQTYSRLRLA SAESSATTKT TTLHRRTPHL RSSHTTSSNN INDPEQAENS 120 QIIRMLKHLC KSDPNFQDVV ENEDENDSNS VVPEFLNPEN LGIKRKRGRP RKHENVVFLR 180 PPTAKRIRNN TVKKVVVFDH ERDREIVNDR GVPVNLTTLA GLEDPYGPEI RRRTVGMSTE 240 DELLGFLRGL NGQWGSRRKK RRVVDAIEFG DVLPKGWRLS LCIKKKEGRV WLFCRRYISP 300 SGQQFESCKE ISTYLISVIG QENLDKPNHI DINSCDDNAF KGASVNAADL VLQEDIKRDG 360 PINNPSSSSS CPVNNPSSSP PAPPLPTNCE EQVTMDIEDA MDVQIGDVFK CLKCSLIFEG 420 KDNLLDHQVL AHDTERSQLG TAVTEWVIVE GGIFECQICH KTFSDRNQYN GHIGCHVKNE 480 VEKTEPSLAP ASELDCDPRL MTGLPNKEAL ASVSAGDNIE PASHLNYETN SGKLSNADEL 540 VHDLNIVSHS IQDGHIDVDR NIYIEESRDK LGNNCTINDE VSRTDQVPDI AVSQSGLLVD 600 EVPLSVNESN RQPETSGEAH VKCIDDKLDC DLDQGISSGS FLLSPFPNKL TGNGSGAGES 660 DISGQVLNQD AVSETGVTYV DSVHDKSDCI LEQGSSGNCL LPSSSNEPMG NGHGVGKDIV 720 GMAASVGVLN HTVSETSRPK SSICEEKGFG ANMDMPINST SDELISEKEK VVGGSSFGLF 780 LDRFGLDKDG ATVAKKLSTK ATRSLISPSI DSVKAVNSES LISSRKQKSA QKGGLVSSRD 840 APPVDNLAHG TYNNVNKLSS GLASSRLDGQ FDVRRNAFVS YGASGIEGVS TFGDENEFRS 900 HPSLTSWQEE ECENKNLDGD VSFPTMEEPR MQINSERRSF LSGGEQSCCT ENVTEVPSNK 960 SEEAKLDDFH IFRNNEAKRN ESVASLGSSH DGLNRDVLDF NTKSNLEFCS LVPSENEQAF 1020 SFQDDVTCLY DRAMEECKQE SSERGLLNHF SIADTSDDIF ENKIYSTPLD GLKFDDDRDI 1080 SSNELSLAFG NPHALYPDAI RVEQKKDLVS CSVVPSKIDE AFDVHTSLSM VNNSMVENLK 1140 AGRGSVGGLF NLSCNDKTSS FPNGGNTVYP GRAWEGMKSD EFKNSGNKFT TGFGSNHGQT 1200 HEVVPSGMWK TTGDGNQLQS GLSTPSHPQI QSPSSFHSFN IMSEKVGDGQ FRLDERYNEG 1260 FGVSGMRSSR PEPVEFSFLT GRSQHNPHPL QGDSRVFSYN AGMEQQFDSS FWLGKNGMMP 1320 STGGRNQITS VCAWCRNEFH LQPVHPGTQD GIGSLCPSCS AGMSGHVNML

Sequence ? help Back to Top

Protein Sequence Length: 1370 aa Download sequence

MATTAAADDD SDRPPLRRDS VPVVDLRLLS QSELYSLSLS SDSSFDLNRG DDVVIPKINR  60
SVFNESAGSR KQTYSRLRLA SAESSATTKT TTLHRRTPHL RSSHTTSSNN INDPEQAENS  120
QIIRMLKHLC KSDPNFQDVV ENEDENDSNS VVPEFLNPEN LGIKRKRGRP RKHENVVFLR  180
PPTAKRIRNN TVKKVVVFDH ERDREIVNDR GVPVNLTTLA GLEDPYGPEI RRRTVGMSTE  240
DELLGFLRGL NGQWGSRRKK RRVVDAIEFG DVLPKGWRLS LCIKKKEGRV WLFCRRYISP  300
SGQQFESCKE ISTYLISVIG QENLDKPNHI DINSCDDNAF KGASVNAADL VLQEDIKRDG  360
PINNPSSSSS CPVNNPSSSP PAPPLPTNCE EQVTMDIEDA MDVQIGDVFK CLKCSLIFEG  420
KDNLLDHQVL AHDTERSQLG TAVTEWVIVE GGIFECQICH KTFSDRNQYN GHIGCHVKNE  480
VEKTEPSLAP ASELDCDPRL MTGLPNKEAL ASVSAGDNIE PASHLNYETN SGKLSNADEL  540
VHDLNIVSHS IQDGHIDVDR NIYIEESRDK LGNNCTINDE VSRTDQVPDI AVSQSGLLVD  600
EVPLSVNESN RQPETSGEAH VKCIDDKLDC DLDQGISSGS FLLSPFPNKL TGNGSGAGES  660
DISGQVLNQD AVSETGVTYV DSVHDKSDCI LEQGSSGNCL LPSSSNEPMG NGHGVGKDIV  720
GMAASVGVLN HTVSETSRPK SSICEEKGFG ANMDMPINST SDELISEKEK VVGGSSFGLF  780
LDRFGLDKDG ATVAKKLSTK ATRSLISPSI DSVKAVNSES LISSRKQKSA QKGGLVSSRD  840
APPVDNLAHG TYNNVNKLSS GLASSRLDGQ FDVRRNAFVS YGASGIEGVS TFGDENEFRS  900
HPSLTSWQEE ECENKNLDGD VSFPTMEEPR MQINSERRSF LSGGEQSCCT ENVTEVPSNK  960
SEEAKLDDFH IFRNNEAKRN ESVASLGSSH DGLNRDVLDF NTKSNLEFCS LVPSENEQAF  1020
SFQDDVTCLY DRAMEECKQE SSERGLLNHF SIADTSDDIF ENKIYSTPLD GLKFDDDRDI  1080
SSNELSLAFG NPHALYPDAI RVEQKKDLVS CSVVPSKIDE AFDVHTSLSM VNNSMVENLK  1140
AGRGSVGGLF NLSCNDKTSS FPNGGNTVYP GRAWEGMKSD EFKNSGNKFT TGFGSNHGQT  1200
HEVVPSGMWK TTGDGNQLQS GLSTPSHPQI QSPSSFHSFN IMSEKVGDGQ FRLDERYNEG  1260
FGVSGMRSSR PEPVEFSFLT GRSQHNPHPL QGDSRVFSYN AGMEQQFDSS FWLGKNGMMP  1320
STGGRNQITS VCAWCRNEFH LQPVHPGTQD GIGSLCPSCS AGMSGHVNML

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	286	RRKKRRVVDAIEFGDVLPKGWRLSLCIKKK
2	258	287	RRKKRRVVDAIEFGDVLPKGWRLSLCIKKK
3	259	288	RRKKRRVVDAIEFGDVLPKGWRLSLCIKKK