PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972003.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23375.9 Da    PI: 10.1065
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.3e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+iifs++gkl e+++
  XP_024972003.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIIFSTKGKLCEFAT 59
                    79***********************************************86 PP
2K-box102.17.4e-3479171597
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     + ++++ + + s++ ++akLk++ie Lq++qRh++GedL+sLslkeLq+LeqqL+++lk++R +Kn+l++e+i+ lqkk kelq++n+ L+kk
  XP_024972003.1  79 QLTATDRESHGSWSLQHAKLKSRIELLQKTQRHIMGEDLDSLSLKELQNLEQQLDTALKHVRLRKNQLMFESISLLQKKDKELQNQNNVLSKK 171
                     56667788899*******************************************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIIFST KGKLCEFATD  60
ASMERILERY ERYSCAERQL TATDRESHGS WSLQHAKLKS RIELLQKTQR HIMGEDLDSL  120
SLKELQNLEQ QLDTALKHVR LRKNQLMFES ISLLQKKDKE LQNQNNVLSK KAGGNGAVEE  180
EIPRETAQPS IVLPPWMLQH MNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-87MIKC_MADS family protein