PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972041.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 199aa    MW: 21398.4 Da    PI: 5.7934
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.95.5e-273104196
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                     +C++C+vlr++C + Cvl+p++     p++q +++ ++ k+FG+s ++++++++p+ + r+++++sl+yeA  r+ +P++Ga+g++++++++l++
  XP_024972041.1   3 SCNGCRVLRKGCGNTCVLRPCLewiqsPDSQGHATLFLSKFFGRSDLINFISSAPPGHrRTELFRSLLYEAVGRTLNPINGAMGLLSTGNWDLCE 97 
                     6*************************99**************************8877589********************************** PP

          DUF260  90 lkaelal 96 
                     +++ ++l
  XP_024972041.1  98 AAVRTVL 104
                     9987766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MGSCNGCRVL RKGCGNTCVL RPCLEWIQSP DSQGHATLFL SKFFGRSDLI NFISSAPPGH  60
RRTELFRSLL YEAVGRTLNP INGAMGLLST GNWDLCEAAV RTVLAGGTPT PLADGILIPE  120
VDESSEVFKA QSARWTMMMN RNQIDAAGTS NAIAPPNVVI AEDSDRDLST KPADDVAVDV  180
LMSFRRGDGG DPKLLKLFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.17e-54LBD family protein